IL_4V4W_136

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

AUGGUUAAGUG*CUAAACCAU

Length

20 nucleotides

Bulged bases

4V4W|1|B0|A|1143

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4W|1|B0|A|1014
4V4W|1|B0|U|1015
4V4W|1|B0|G|1016
4V4W|1|B0|G|1017
4V4W|1|B0|U|1018
4V4W|1|B0|U|1019
4V4W|1|B0|A|1020
4V4W|1|B0|A|1021
4V4W|1|B0|G|1022
4V4W|1|B0|U|1023
4V4W|1|B0|G|1024
*
4V4W|1|B0|C|1140
4V4W|1|B0|U|1141
4V4W|1|B0|A|1142
4V4W|1|B0|A|1143
4V4W|1|B0|A|1144
4V4W|1|B0|C|1145
4V4W|1|B0|C|1146
4V4W|1|B0|A|1147
4V4W|1|B0|U|1148

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain B9

5S ribosomal RNA; 5S rRNA

Chain BH

50S ribosomal protein L13