IL_4V4W_137

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GGGAAACG*CGGAAGAUGUACGGGGC

Length

25 nucleotides

Bulged bases

4V4W|1|B0|G|1025, 4V4W|1|B0|A|1127, 4V4W|1|B0|G|1128, 4V4W|1|B0|A|1129, 4V4W|1|B0|U|1130, 4V4W|1|B0|A|1133

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4W|1|B0|G|1024
4V4W|1|B0|G|1025
4V4W|1|B0|G|1026
4V4W|1|B0|A|1027
4V4W|1|B0|A|1028
4V4W|1|B0|A|1029
4V4W|1|B0|C|1030
4V4W|1|B0|G|1031
*
4V4W|1|B0|C|1123
4V4W|1|B0|G|1124
4V4W|1|B0|G|1125
4V4W|1|B0|A|1126
4V4W|1|B0|A|1127
4V4W|1|B0|G|1128
4V4W|1|B0|A|1129
4V4W|1|B0|U|1130
4V4W|1|B0|G|1131
4V4W|1|B0|U|1132
4V4W|1|B0|A|1133
4V4W|1|B0|C|1135
4V4W|1|B0|G|1136
4V4W|1|B0|G|1137
4V4W|1|B0|G|1138
4V4W|1|B0|G|1139
4V4W|1|B0|C|1140

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain B9

5S ribosomal RNA; 5S rRNA

Chain BB

50S ribosomal protein L3

Chain BH

50S ribosomal protein L13

Chain BK

50S ribosomal protein L16