IL_4V4W_139

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GAAGGCCCAGACAG*UCGAGUCGGC

Length

24 nucleotides

Bulged bases

4V4W|1|B0|C|1045, 4V4W|1|B0|A|1046

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4W|1|B0|G|1038
4V4W|1|B0|A|1039
4V4W|1|B0|A|1040
4V4W|1|B0|G|1041
4V4W|1|B0|G|1042
4V4W|1|B0|C|1043
4V4W|1|B0|C|1044
4V4W|1|B0|C|1045
4V4W|1|B0|A|1046
4V4W|1|B0|G|1047
4V4W|1|B0|A|1048
4V4W|1|B0|C|1049
4V4W|1|B0|A|1050
4V4W|1|B0|G|1051
*
4V4W|1|B0|U|1108
4V4W|1|B0|C|1109
4V4W|1|B0|G|1110
4V4W|1|B0|A|1111
4V4W|1|B0|G|1112
4V4W|1|B0|U|1113
4V4W|1|B0|C|1114
4V4W|1|B0|G|1115
4V4W|1|B0|G|1116
4V4W|1|B0|C|1117

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L7/L12

Chain B5

50S ribosomal protein L7/L12

Chain BK

50S ribosomal protein L16

Chain BT

50S ribosomal protein L25