IL_4V4W_140

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

UGUUG*CAUCA

Length

10 nucleotides

Bulged bases

4V4W|1|B0|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4W_140 not in the Motif Atlas

Homologous match to IL_5J7L_384

Geometric discrepancy: 0.1743

The information below is about IL_5J7L_384

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_33835.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4V4W|1|B0|U|1058
4V4W|1|B0|G|1059
4V4W|1|B0|U|1060
4V4W|1|B0|U|1061
4V4W|1|B0|G|1062
*
4V4W|1|B0|C|1076
4V4W|1|B0|A|1077
4V4W|1|B0|U|1078
4V4W|1|B0|C|1079
4V4W|1|B0|A|1080

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L7/L12

Chain BG

50S ribosomal protein L11