IL_4V4W_144

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

UGGGUGAUGGAG*CUUCUAAACGUUGAAA

Length

28 nucleotides

Bulged bases

4V4W|1|B0|U|1585

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4W|1|B0|U|1413
4V4W|1|B0|G|1414
4V4W|1|B0|G|1415
4V4W|1|B0|G|1416
4V4W|1|B0|U|1417
4V4W|1|B0|G|1418
4V4W|1|B0|A|1419
4V4W|1|B0|U|1420
4V4W|1|B0|G|1421
4V4W|1|B0|G|1422
4V4W|1|B0|A|1423
4V4W|1|B0|G|1424
*
4V4W|1|B0|C|1574
4V4W|1|B0|U|1575
4V4W|1|B0|U|1576
4V4W|1|B0|C|1577
4V4W|1|B0|U|1578
4V4W|1|B0|A|1579
4V4W|1|B0|A|1580
4V4W|1|B0|A|1581
4V4W|1|B0|C|1582
4V4W|1|B0|G|1583
4V4W|1|B0|U|1584
4V4W|1|B0|U|1585
4V4W|1|B0|G|1586
4V4W|1|B0|A|1587
4V4W|1|B0|A|1588
4V4W|1|B0|A|1589

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BA

50S ribosomal protein L2