IL_4V4W_145

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GGGACGG*UCCAGGAAAAGC

Length

19 nucleotides

Bulged bases

4V4W|1|B0|A|1427, 4V4W|1|B0|C|1428, 4V4W|1|B0|A|1566

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4W|1|B0|G|1424
4V4W|1|B0|G|1425
4V4W|1|B0|G|1426
4V4W|1|B0|A|1427
4V4W|1|B0|C|1428
4V4W|1|B0|G|1429
4V4W|1|B0|G|1430
*
4V4W|1|B0|U|1563
4V4W|1|B0|C|1564
4V4W|1|B0|C|1565
4V4W|1|B0|A|1566
4V4W|1|B0|G|1567
4V4W|1|B0|G|1568
4V4W|1|B0|A|1569
4V4W|1|B0|A|1570
4V4W|1|B0|A|1571
4V4W|1|B0|A|1572
4V4W|1|B0|G|1573
4V4W|1|B0|C|1574

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BA

50S ribosomal protein L2