IL_4V4W_147

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

UCAAGGGCG*CACAUGCCUCAGA

Length

22 nucleotides

Bulged bases

4V4W|1|B0|C|1481, 4V4W|1|B0|C|1508, 4V4W|1|B0|A|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4W|1|B0|U|1474
4V4W|1|B0|C|1475
4V4W|1|B0|A|1476
4V4W|1|B0|A|1477
4V4W|1|B0|G|1478
4V4W|1|B0|G|1479
4V4W|1|B0|G|1480
4V4W|1|B0|C|1481
4V4W|1|B0|G|1482
*
4V4W|1|B0|C|1506
4V4W|1|B0|A|1507
4V4W|1|B0|C|1508
4V4W|1|B0|A|1509
4V4W|1|B0|U|1510
4V4W|1|B0|G|1511
4V4W|1|B0|C|1512
4V4W|1|B0|C|1513
4V4W|1|B0|U|1514
4V4W|1|B0|C|1515
4V4W|1|B0|A|1516
4V4W|1|B0|G|1517
4V4W|1|B0|A|1518

Current chains

Chain B0

23S ribosomal RNA

Nearby chains