IL_4V4W_150

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GAAGGUUAAUGG*CUCGAAGCCC

Length

22 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4W|1|B0|G|1846
4V4W|1|B0|A|1847
4V4W|1|B0|A|1848
4V4W|1|B0|G|1849
4V4W|1|B0|G|1850
4V4W|1|B0|U|1851
4V4W|1|B0|U|1852
4V4W|1|B0|A|1853
4V4W|1|B0|A|1854
4V4W|1|B0|U|1859
4V4W|1|B0|G|1860
4V4W|1|B0|G|1861
*
4V4W|1|B0|C|1881
4V4W|1|B0|U|1882
4V4W|1|B0|C|1887
4V4W|1|B0|G|1888
4V4W|1|B0|A|1889
4V4W|1|B0|A|1890
4V4W|1|B0|G|1891
4V4W|1|B0|C|1892
4V4W|1|B0|C|1893
4V4W|1|B0|C|1894

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AW

Transfer RNA; tRNA