IL_4V4W_154

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

4V4W|1|AA|A|412, 4V4W|1|AA|A|414

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4W|1|AA|U|409
4V4W|1|AA|G|410
4V4W|1|AA|A|411
4V4W|1|AA|A|412
4V4W|1|AA|G|413
4V4W|1|AA|A|414
4V4W|1|AA|A|415
4V4W|1|AA|G|416
*
4V4W|1|AA|U|427
4V4W|1|AA|G|428
4V4W|1|AA|U|429
4V4W|1|AA|A|430
4V4W|1|AA|A|431
4V4W|1|AA|A|432
4V4W|1|AA|G|433

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal subunit protein S4