IL_4V4W_160

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GGGGUAGAGCACUGUUU*AUGCAAACUGCGAAUAC

Length

34 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4W|1|B0|G|856
4V4W|1|B0|G|857
4V4W|1|B0|G|858
4V4W|1|B0|G|859
4V4W|1|B0|U|860
4V4W|1|B0|A|861
4V4W|1|B0|G|862
4V4W|1|B0|A|863
4V4W|1|B0|G|864
4V4W|1|B0|C|865
4V4W|1|B0|A|866
4V4W|1|B0|C|867
4V4W|1|B0|U|868
4V4W|1|B0|G|869
4V4W|1|B0|U|870
4V4W|1|B0|U|871
4V4W|1|B0|U|872
*
4V4W|1|B0|A|905
4V4W|1|B0|U|906
4V4W|1|B0|G|907
4V4W|1|B0|C|908
4V4W|1|B0|A|909
4V4W|1|B0|A|910
4V4W|1|B0|A|911
4V4W|1|B0|C|912
4V4W|1|B0|U|913
4V4W|1|B0|G|914
4V4W|1|B0|C|915
4V4W|1|B0|G|916
4V4W|1|B0|A|917
4V4W|1|B0|A|918
4V4W|1|B0|U|919
4V4W|1|B0|A|920
4V4W|1|B0|C|921

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain AV

Transfer RNA; tRNA

Chain B9

5S ribosomal RNA; 5S rRNA

Chain BK

50S ribosomal protein L16

Chain BU

50S ribosomal protein L27