IL_4V4X_029

3D structure

PDB id

4V4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.

Experimental method

X-RAY DIFFRACTION

Resolution

5 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

4V4X|1|AA|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4X_029 not in the Motif Atlas

Homologous match to IL_4LFB_031

Geometric discrepancy: 0.1702

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

4V4X|1|AA|G|683
4V4X|1|AA|A|684
4V4X|1|AA|G|685
4V4X|1|AA|U|686
4V4X|1|AA|A|687
4V4X|1|AA|G|688
*
4V4X|1|AA|C|699
4V4X|1|AA|G|700
4V4X|1|AA|C|701
4V4X|1|AA|A|702
4V4X|1|AA|G|703
4V4X|1|AA|A|704
4V4X|1|AA|U|705
4V4X|1|AA|A|706
4V4X|1|AA|C|707

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AN

30S ribosomal protein S11

Chain BA

Large subunit ribosomal RNA; LSU rRNA