3D structure

PDB id
4V4X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.
Experimental method
X-RAY DIFFRACTION
Resolution
5 Å

Loop

Sequence
CAAAC*GGUAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V4X_031 not in the Motif Atlas
Homologous match to IL_4LFB_033
Geometric discrepancy: 0.1987
The information below is about IL_4LFB_033
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_05821.1
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
17

Unit IDs

4V4X|1|AA|C|779
4V4X|1|AA|A|780
4V4X|1|AA|A|781
4V4X|1|AA|A|782
4V4X|1|AA|C|783
*
4V4X|1|AA|G|799
4V4X|1|AA|G|800
4V4X|1|AA|U|801
4V4X|1|AA|A|802
4V4X|1|AA|G|803

Current chains

Chain AA
16S rRNA

Nearby chains

Chain AN
30S ribosomal protein S11
Chain BA
Large subunit ribosomal RNA; LSU rRNA
Chain BD
50S ribosomal protein L2

Coloring options:


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