IL_4V4X_032

3D structure

PDB id

4V4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.

Experimental method

X-RAY DIFFRACTION

Resolution

5 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4X_032 not in the Motif Atlas

Homologous match to IL_6CZR_364

Geometric discrepancy: 0.2054

The information below is about IL_6CZR_364

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

4V4X|1|AA|G|887
4V4X|1|AA|G|888
4V4X|1|AA|A|889
4V4X|1|AA|G|890
4V4X|1|AA|U|891
4V4X|1|AA|A|892
4V4X|1|AA|C|893
4V4X|1|AA|G|894
*
4V4X|1|AA|U|905
4V4X|1|AA|G|906
4V4X|1|AA|A|907
4V4X|1|AA|A|908
4V4X|1|AA|A|909
4V4X|1|AA|C|910

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AO

30S ribosomal protein S12