IL_4V4X_040

3D structure

PDB id

4V4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.

Experimental method

X-RAY DIFFRACTION

Resolution

5 Å

Loop

Sequence

GG*UCAGC

Length

7 nucleotides

Bulged bases

4V4X|1|AA|C|1200, 4V4X|1|AA|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4X_040 not in the Motif Atlas

Homologous match to IL_6CZR_155

Geometric discrepancy: 0.2904

The information below is about IL_6CZR_155

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

4V4X|1|AA|G|1057
4V4X|1|AA|G|1058
*
4V4X|1|AA|U|1199
4V4X|1|AA|C|1200
4V4X|1|AA|A|1201
4V4X|1|AA|G|1202
4V4X|1|AA|C|1203

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AF

30S ribosomal protein S3

Chain AM

30S ribosomal protein S10

Chain AQ

30S ribosomal protein S14