RNA 3D Hub //

Motif IL_95583.1 Version IL_95583.1 of this group appears in releases 3.95 to 3.95

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 51-52-53-4
1 IL_3RW6_0033RW60.71811Minor groove platformHconstitutive transport element(CTE)of Mason-Pfizer monkey virus RNAU38A40U41*A20G21cWWtHScWW
2 IL_6CZR_1556CZR0.52482Minor groove platform1a SSU rRNAU1181G1184C1185*G1040G1041cWWntHScWW
3 IL_5J7L_0485J7L0.57742Minor groove platformAA SSU rRNAU1199U1202C1203*G1057G1058cWWtHScWW
4 IL_4LFB_0454LFB0.54992Minor groove platformA SSU rRNAU1199G1202C1203*G1057G1058cWWtHScWW
5 IL_9DFE_0739DFE0.31011Minor groove platform1A LSU rRNAG1846A1848G1849*C1893C1894cWWncWScWW
6 IL_1U9S_0051U9S0.13871Minor groove platform, major groove intercalationARIBONUCLEASE PC136G138C139*G161G162cWWntHScWW
7 IL_5J7L_3145J7L0.00001Minor groove platform, major groove intercalationDA LSU rRNAC1837G1839G1840*C1902G1903cWWntHScWW
8 IL_4V9F_0664V9F0.14031Minor groove platform, major groove intercalation0 LSU rRNAC1893A1895G1896*C1943G1944cWWcWW
9 IL_9DFE_0719DFE0.12971Minor groove platform, major groove intercalation1A LSU rRNAC1837G1839G1840*C1902G1903cWWntHScWW
10 IL_8P9A_3128P9A0.15271Minor groove platform, major groove intercalationAR LSU rRNAC2196A2198G2199*C2245G2246cWWcWW
11 IL_8CRE_0898CRE0.159411 LSU rRNAC2174A2176G2177*C2223G2224cWWcWW
12 IL_7A0S_0667A0S0.17121Minor groove platform, major groove intercalationX LSU rRNAC1829G1831G1832*C1885G1886cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CCGG*CG3
CCAG*CG3
UCAGC*GG2
UAAU*AG1
UCAUC*GG1
GAAG*CC1
CAGC*GG1
Non-Watson-Crick part of the motif
SequenceCounts
CG*3
CA*3
AA*2
CAG*2
CAU*1
AG*1

Release history

Release3.95
Date2025-03-26
StatusNew id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Minor groove platform, major groove intercalation (6)
  • Minor groove platform (5)
  • (1)
    • Basepair signature
    cWW-L-cWW
    Heat map statistics
    Min 0.09 | Avg 0.37 | Max 0.83
    Help

    Coloring options:

    IL_3RW6_003:IL_3RW6_003 = 0IL_3RW6_003:IL_6CZR_155 = 0.3023IL_3RW6_003:IL_5J7L_048 = 0.3202IL_3RW6_003:IL_4LFB_045 = 0.3526IL_3RW6_003:IL_9DFE_073 = 0.4917IL_3RW6_003:IL_1U9S_005 = 0.6861IL_3RW6_003:IL_5J7L_314 = 0.7181IL_3RW6_003:IL_4V9F_066 = 0.7626IL_3RW6_003:IL_9DFE_071 = 0.7899IL_3RW6_003:IL_8P9A_312 = 0.7953IL_3RW6_003:IL_8CRE_089 = 0.8144IL_3RW6_003:IL_7A0S_066 = 0.8263IL_6CZR_155:IL_3RW6_003 = 0.3023IL_6CZR_155:IL_6CZR_155 = 0IL_6CZR_155:IL_5J7L_048 = 0.1489IL_6CZR_155:IL_4LFB_045 = 0.1613IL_6CZR_155:IL_9DFE_073 = 0.379IL_6CZR_155:IL_1U9S_005 = 0.5089IL_6CZR_155:IL_5J7L_314 = 0.5248IL_6CZR_155:IL_4V9F_066 = 0.548IL_6CZR_155:IL_9DFE_071 = 0.576IL_6CZR_155:IL_8P9A_312 = 0.5785IL_6CZR_155:IL_8CRE_089 = 0.6IL_6CZR_155:IL_7A0S_066 = 0.6423IL_5J7L_048:IL_3RW6_003 = 0.3202IL_5J7L_048:IL_6CZR_155 = 0.1489IL_5J7L_048:IL_5J7L_048 = 0IL_5J7L_048:IL_4LFB_045 = 0.1035IL_5J7L_048:IL_9DFE_073 = 0.4105IL_5J7L_048:IL_1U9S_005 = 0.5509IL_5J7L_048:IL_5J7L_314 = 0.5774IL_5J7L_048:IL_4V9F_066 = 0.6033IL_5J7L_048:IL_9DFE_071 = 0.6291IL_5J7L_048:IL_8P9A_312 = 0.6168IL_5J7L_048:IL_8CRE_089 = 0.6324IL_5J7L_048:IL_7A0S_066 = 0.6842IL_4LFB_045:IL_3RW6_003 = 0.3526IL_4LFB_045:IL_6CZR_155 = 0.1613IL_4LFB_045:IL_5J7L_048 = 0.1035IL_4LFB_045:IL_4LFB_045 = 0IL_4LFB_045:IL_9DFE_073 = 0.39IL_4LFB_045:IL_1U9S_005 = 0.5176IL_4LFB_045:IL_5J7L_314 = 0.5499IL_4LFB_045:IL_4V9F_066 = 0.5768IL_4LFB_045:IL_9DFE_071 = 0.5976IL_4LFB_045:IL_8P9A_312 = 0.5914IL_4LFB_045:IL_8CRE_089 = 0.6028IL_4LFB_045:IL_7A0S_066 = 0.6684IL_9DFE_073:IL_3RW6_003 = 0.4917IL_9DFE_073:IL_6CZR_155 = 0.379IL_9DFE_073:IL_5J7L_048 = 0.4105IL_9DFE_073:IL_4LFB_045 = 0.39IL_9DFE_073:IL_9DFE_073 = 0IL_9DFE_073:IL_1U9S_005 = 0.2863IL_9DFE_073:IL_5J7L_314 = 0.3101IL_9DFE_073:IL_4V9F_066 = 0.4013IL_9DFE_073:IL_9DFE_071 = 0.4071IL_9DFE_073:IL_8P9A_312 = 0.4025IL_9DFE_073:IL_8CRE_089 = 0.4087IL_9DFE_073:IL_7A0S_066 = 0.4124IL_1U9S_005:IL_3RW6_003 = 0.6861IL_1U9S_005:IL_6CZR_155 = 0.5089IL_1U9S_005:IL_5J7L_048 = 0.5509IL_1U9S_005:IL_4LFB_045 = 0.5176IL_1U9S_005:IL_9DFE_073 = 0.2863IL_1U9S_005:IL_1U9S_005 = 0IL_1U9S_005:IL_5J7L_314 = 0.1387IL_1U9S_005:IL_4V9F_066 = 0.2202IL_1U9S_005:IL_9DFE_071 = 0.2043IL_1U9S_005:IL_8P9A_312 = 0.2112IL_1U9S_005:IL_8CRE_089 = 0.2028IL_1U9S_005:IL_7A0S_066 = 0.2439IL_5J7L_314:IL_3RW6_003 = 0.7181IL_5J7L_314:IL_6CZR_155 = 0.5248IL_5J7L_314:IL_5J7L_048 = 0.5774IL_5J7L_314:IL_4LFB_045 = 0.5499IL_5J7L_314:IL_9DFE_073 = 0.3101IL_5J7L_314:IL_1U9S_005 = 0.1387IL_5J7L_314:IL_5J7L_314 = 0IL_5J7L_314:IL_4V9F_066 = 0.1403IL_5J7L_314:IL_9DFE_071 = 0.1297IL_5J7L_314:IL_8P9A_312 = 0.1527IL_5J7L_314:IL_8CRE_089 = 0.1594IL_5J7L_314:IL_7A0S_066 = 0.1712IL_4V9F_066:IL_3RW6_003 = 0.7626IL_4V9F_066:IL_6CZR_155 = 0.548IL_4V9F_066:IL_5J7L_048 = 0.6033IL_4V9F_066:IL_4LFB_045 = 0.5768IL_4V9F_066:IL_9DFE_073 = 0.4013IL_4V9F_066:IL_1U9S_005 = 0.2202IL_4V9F_066:IL_5J7L_314 = 0.1403IL_4V9F_066:IL_4V9F_066 = 0IL_4V9F_066:IL_9DFE_071 = 0.1186IL_4V9F_066:IL_8P9A_312 = 0.1623IL_4V9F_066:IL_8CRE_089 = 0.1576IL_4V9F_066:IL_7A0S_066 = 0.2072IL_9DFE_071:IL_3RW6_003 = 0.7899IL_9DFE_071:IL_6CZR_155 = 0.576IL_9DFE_071:IL_5J7L_048 = 0.6291IL_9DFE_071:IL_4LFB_045 = 0.5976IL_9DFE_071:IL_9DFE_073 = 0.4071IL_9DFE_071:IL_1U9S_005 = 0.2043IL_9DFE_071:IL_5J7L_314 = 0.1297IL_9DFE_071:IL_4V9F_066 = 0.1186IL_9DFE_071:IL_9DFE_071 = 0IL_9DFE_071:IL_8P9A_312 = 0.1051IL_9DFE_071:IL_8CRE_089 = 0.1196IL_9DFE_071:IL_7A0S_066 = 0.1993IL_8P9A_312:IL_3RW6_003 = 0.7953IL_8P9A_312:IL_6CZR_155 = 0.5785IL_8P9A_312:IL_5J7L_048 = 0.6168IL_8P9A_312:IL_4LFB_045 = 0.5914IL_8P9A_312:IL_9DFE_073 = 0.4025IL_8P9A_312:IL_1U9S_005 = 0.2112IL_8P9A_312:IL_5J7L_314 = 0.1527IL_8P9A_312:IL_4V9F_066 = 0.1623IL_8P9A_312:IL_9DFE_071 = 0.1051IL_8P9A_312:IL_8P9A_312 = 0IL_8P9A_312:IL_8CRE_089 = 0.0903IL_8P9A_312:IL_7A0S_066 = 0.1872IL_8CRE_089:IL_3RW6_003 = 0.8144IL_8CRE_089:IL_6CZR_155 = 0.6IL_8CRE_089:IL_5J7L_048 = 0.6324IL_8CRE_089:IL_4LFB_045 = 0.6028IL_8CRE_089:IL_9DFE_073 = 0.4087IL_8CRE_089:IL_1U9S_005 = 0.2028IL_8CRE_089:IL_5J7L_314 = 0.1594IL_8CRE_089:IL_4V9F_066 = 0.1576IL_8CRE_089:IL_9DFE_071 = 0.1196IL_8CRE_089:IL_8P9A_312 = 0.0903IL_8CRE_089:IL_8CRE_089 = 0IL_8CRE_089:IL_7A0S_066 = 0.1787IL_7A0S_066:IL_3RW6_003 = 0.8263IL_7A0S_066:IL_6CZR_155 = 0.6423IL_7A0S_066:IL_5J7L_048 = 0.6842IL_7A0S_066:IL_4LFB_045 = 0.6684IL_7A0S_066:IL_9DFE_073 = 0.4124IL_7A0S_066:IL_1U9S_005 = 0.2439IL_7A0S_066:IL_5J7L_314 = 0.1712IL_7A0S_066:IL_4V9F_066 = 0.2072IL_7A0S_066:IL_9DFE_071 = 0.1993IL_7A0S_066:IL_8P9A_312 = 0.1872IL_7A0S_066:IL_8CRE_089 = 0.1787IL_7A0S_066:IL_7A0S_066 = 0IL_3RW6_003IL_6CZR_155IL_5J7L_048IL_4LFB_045IL_9DFE_073IL_1U9S_005IL_5J7L_314IL_4V9F_066IL_9DFE_071IL_8P9A_312IL_8CRE_089IL_7A0S_066Discrepancy0.000.200.400.600.80
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