IL_4V4X_047

3D structure

PDB id

4V4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.

Experimental method

X-RAY DIFFRACTION

Resolution

5 Å

Loop

Sequence

CCAC*GGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4X_047 not in the Motif Atlas

Geometric match to IL_6JDV_001

Geometric discrepancy: 0.3572

The information below is about IL_6JDV_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

4V4X|1|AA|C|1259
4V4X|1|AA|C|1260
4V4X|1|AA|A|1261
4V4X|1|AA|C|1262
*
4V4X|1|AA|G|1273
4V4X|1|AA|G|1274
4V4X|1|AA|A|1275
4V4X|1|AA|G|1276

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AX

30S ribosomal protein Thx