IL_4V4X_068

3D structure

PDB id

4V4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.

Experimental method

X-RAY DIFFRACTION

Resolution

5 Å

Loop

Sequence

UGAAG*UGGAGG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4X_068 not in the Motif Atlas

Homologous match to IL_5J7L_263

Geometric discrepancy: 0.3577

The information below is about IL_5J7L_263

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

4V4X|1|BA|U|703
4V4X|1|BA|G|704
4V4X|1|BA|A|705
4V4X|1|BA|A|706
4V4X|1|BA|G|707
*
4V4X|1|BA|U|724
4V4X|1|BA|G|725
4V4X|1|BA|G|726
4V4X|1|BA|A|727
4V4X|1|BA|G|728
4V4X|1|BA|G|729

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L2