IL_4V4X_092

3D structure

PDB id

4V4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.

Experimental method

X-RAY DIFFRACTION

Resolution

5 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

4V4X|1|BA|A|1379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4X_092 not in the Motif Atlas

Homologous match to IL_7RQB_052

Geometric discrepancy: 0.2818

The information below is about IL_7RQB_052

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

4V4X|1|BA|C|1351
4V4X|1|BA|U|1352
4V4X|1|BA|A|1353
4V4X|1|BA|A|1354
4V4X|1|BA|G|1355
*
4V4X|1|BA|C|1376
4V4X|1|BA|G|1377
4V4X|1|BA|A|1378
4V4X|1|BA|A|1379
4V4X|1|BA|G|1380

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B6

50S ribosomal protein L34

Chain BD

50S ribosomal protein L2