IL_4V4Y_020

3D structure

PDB id

4V4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4Y_020 not in the Motif Atlas

Homologous match to IL_4LFB_019

Geometric discrepancy: 0.3077

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4V4Y|1|AA|G|450
4V4Y|1|AA|A|451
4V4Y|1|AA|A|452
4V4Y|1|AA|A|453
4V4Y|1|AA|C|454
4V4Y|1|AA|C|455
*
4V4Y|1|AA|G|477
4V4Y|1|AA|A|478
4V4Y|1|AA|C|479
4V4Y|1|AA|U|480
4V4Y|1|AA|G|481
4V4Y|1|AA|A|482
4V4Y|1|AA|C|483

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AS

30S ribosomal protein S16