IL_4V4Y_038

3D structure

PDB id

4V4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4Y_038 not in the Motif Atlas

Homologous match to IL_4LFB_038

Geometric discrepancy: 0.3302

The information below is about IL_4LFB_038

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

4V4Y|1|AA|G|953
4V4Y|1|AA|G|954
*
4V4Y|1|AA|C|1226
4V4Y|1|AA|A|1227
4V4Y|1|AA|C|1228

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AC

Transfer RNA; tRNA

Chain AP

30S ribosomal protein S13

Chain AV

30S ribosomal protein S19