IL_4V4Y_065

3D structure

PDB id

4V4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

GCGUG*CC

Length

7 nucleotides

Bulged bases

4V4Y|1|BA|U|271|||C

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4Y_065 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.2159

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

4V4Y|1|BA|G|271
4V4Y|1|BA|C|271|||A
4V4Y|1|BA|G|271|||B
4V4Y|1|BA|U|271|||C
4V4Y|1|BA|G|272
*
4V4Y|1|BA|C|365
4V4Y|1|BA|C|366

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BK

50S ribosomal protein L9