IL_4V4Y_076

3D structure

PDB id

4V4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

CUGAC*GGUGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4Y_076 not in the Motif Atlas

Homologous match to IL_9DFE_025

Geometric discrepancy: 0.5451

The information below is about IL_9DFE_025

Detailed Annotation

Stack outside cWW

Broad Annotation

Stack outside cWW

Motif group

IL_08938.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

22

Unit IDs

4V4Y|1|BA|C|846
4V4Y|1|BA|U|847
4V4Y|1|BA|G|848
4V4Y|1|BA|A|849
4V4Y|1|BA|C|850
*
4V4Y|1|BA|G|928
4V4Y|1|BA|G|929
4V4Y|1|BA|U|930
4V4Y|1|BA|G|931
4V4Y|1|BA|G|932

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L30