3D structure

PDB id
4V4Y (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.
Experimental method
X-RAY DIFFRACTION
Resolution
5.5 Å

Loop

Sequence
CCUCU*AUG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V4Y_141 not in the Motif Atlas
Homologous match to IL_4WF9_101
Geometric discrepancy: 0.3359
The information below is about IL_4WF9_101
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_63596.12
Basepair signature
cWW-cWS-cSH-tWH-cWW-L
Number of instances in this motif group
22

Unit IDs

4V4Y|1|BA|C|2680
4V4Y|1|BA|C|2681
4V4Y|1|BA|U|2682
4V4Y|1|BA|C|2683
4V4Y|1|BA|U|2684
*
4V4Y|1|BA|A|2725
4V4Y|1|BA|U|2726
4V4Y|1|BA|G|2727

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain BE
50S ribosomal protein L3
Chain BN
50S ribosomal protein L14
Chain BS
50S ribosomal protein L19

Coloring options:


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