IL_4V4Z_017

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

4V4Z|1|AA|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4Z_017 not in the Motif Atlas

Homologous match to IL_6CZR_359

Geometric discrepancy: 0.2905

The information below is about IL_6CZR_359

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.2

Basepair signature

cWW-tSH-tWH-cWH-tSS-tHW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

4V4Z|1|AA|G|409
4V4Z|1|AA|G|410
4V4Z|1|AA|A|411
4V4Z|1|AA|A|412
4V4Z|1|AA|G|413
4V4Z|1|AA|A|414
4V4Z|1|AA|A|415
4V4Z|1|AA|G|416
*
4V4Z|1|AA|U|427
4V4Z|1|AA|G|428
4V4Z|1|AA|U|429
4V4Z|1|AA|A|430
4V4Z|1|AA|A|431
4V4Z|1|AA|A|432
4V4Z|1|AA|C|433

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AG

30S ribosomal protein S4