IL_4V4Z_018

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

GGACG*CGGUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4Z_018 not in the Motif Atlas

Homologous match to IL_6CZR_130

Geometric discrepancy: 0.2514

The information below is about IL_6CZR_130

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.3

Basepair signature

cWW-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4V4Z|1|AA|G|446
4V4Z|1|AA|G|447
4V4Z|1|AA|A|448
4V4Z|1|AA|C|449
4V4Z|1|AA|G|450
*
4V4Z|1|AA|C|483
4V4Z|1|AA|G|484
4V4Z|1|AA|G|485
4V4Z|1|AA|U|486
4V4Z|1|AA|A|487
4V4Z|1|AA|C|488

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AS

30S ribosomal protein S16