IL_4V4Z_021

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

4V4Z|1|AA|G|570, 4V4Z|1|AA|U|571, 4V4Z|1|AA|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4Z_021 not in the Motif Atlas

Homologous match to IL_6CZR_134

Geometric discrepancy: 0.2588

The information below is about IL_6CZR_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.5

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

4V4Z|1|AA|C|569
4V4Z|1|AA|G|570
4V4Z|1|AA|U|571
4V4Z|1|AA|A|572
4V4Z|1|AA|A|573
4V4Z|1|AA|A|574
4V4Z|1|AA|G|575
*
4V4Z|1|AA|C|880
4V4Z|1|AA|G|881

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AO

30S ribosomal protein S12

Chain AT

30S ribosomal protein S17