IL_4V4Z_032

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4Z_032 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.1948

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

4V4Z|1|AA|G|887
4V4Z|1|AA|G|888
4V4Z|1|AA|A|889
4V4Z|1|AA|G|890
4V4Z|1|AA|U|891
4V4Z|1|AA|A|892
4V4Z|1|AA|C|893
4V4Z|1|AA|G|894
*
4V4Z|1|AA|U|905
4V4Z|1|AA|G|906
4V4Z|1|AA|A|907
4V4Z|1|AA|A|908
4V4Z|1|AA|A|909
4V4Z|1|AA|C|910

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AO

30S ribosomal protein S12