IL_4V4Z_043

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

GUUG*CACUC

Length

9 nucleotides

Bulged bases

4V4Z|1|AA|U|1125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4Z_043 not in the Motif Atlas

Homologous match to IL_6CZR_158

Geometric discrepancy: 0.5926

The information below is about IL_6CZR_158

Detailed Annotation

Minor groove platform

Broad Annotation

Minor groove platform

Motif group

IL_40144.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

4V4Z|1|AA|G|1124
4V4Z|1|AA|U|1125
4V4Z|1|AA|U|1126
4V4Z|1|AA|G|1127
*
4V4Z|1|AA|C|1145
4V4Z|1|AA|A|1146
4V4Z|1|AA|C|1147
4V4Z|1|AA|U|1148
4V4Z|1|AA|C|1149

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AL

30S ribosomal protein S9

Chain AM

30S ribosomal protein S10