IL_4V4Z_046

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

GAUG*CUAAUC

Length

10 nucleotides

Bulged bases

4V4Z|1|AA|U|1257, 4V4Z|1|AA|A|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4Z_046 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.3583

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

4V4Z|1|AA|G|1255
4V4Z|1|AA|A|1256
4V4Z|1|AA|U|1257
4V4Z|1|AA|G|1258
*
4V4Z|1|AA|C|1277
4V4Z|1|AA|U|1278
4V4Z|1|AA|A|1279
4V4Z|1|AA|A|1280
4V4Z|1|AA|U|1281
4V4Z|1|AA|C|1282

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AF

30S ribosomal protein S3

Chain AM

30S ribosomal protein S10

Chain AQ

30S ribosomal protein S14