IL_4V4Z_069

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4V4Z|1|BA|G|801, 4V4Z|1|BA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4Z_069 not in the Motif Atlas

Geometric match to IL_7A0S_015

Geometric discrepancy: 0.1931

The information below is about IL_7A0S_015

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.1

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

10

Unit IDs

4V4Z|1|BA|G|674
4V4Z|1|BA|A|675
4V4Z|1|BA|A|676
4V4Z|1|BA|A|677
4V4Z|1|BA|C|678
*
4V4Z|1|BA|G|799
4V4Z|1|BA|A|800
4V4Z|1|BA|G|801
4V4Z|1|BA|A|802
4V4Z|1|BA|U|803
4V4Z|1|BA|A|804
4V4Z|1|BA|G|805
4V4Z|1|BA|C|806

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BF

50S RIBOSOMAL PROTEIN L4

Chain BO

50S RIBOSOMAL PROTEIN L15