IL_4V4Z_071

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

UGAAG*UGGAGG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4Z_071 not in the Motif Atlas

Homologous match to IL_7RQB_021

Geometric discrepancy: 0.4426

The information below is about IL_7RQB_021

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

4V4Z|1|BA|U|703
4V4Z|1|BA|G|704
4V4Z|1|BA|A|705
4V4Z|1|BA|A|706
4V4Z|1|BA|G|707
*
4V4Z|1|BA|U|724
4V4Z|1|BA|G|725
4V4Z|1|BA|G|726
4V4Z|1|BA|A|727
4V4Z|1|BA|G|728
4V4Z|1|BA|G|729

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BD

50S RIBOSOMAL PROTEIN L2