IL_4V4Z_089

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

4V4Z|1|BA|A|1088, 4V4Z|1|BA|G|1089

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4Z_089 not in the Motif Atlas

Geometric match to IL_2O3X_001

Geometric discrepancy: 0.3387

The information below is about IL_2O3X_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

4V4Z|1|BA|G|1087
4V4Z|1|BA|A|1088
4V4Z|1|BA|G|1089
4V4Z|1|BA|U|1090
4V4Z|1|BA|G|1091
*
4V4Z|1|BA|C|1100
4V4Z|1|BA|U|1101
4V4Z|1|BA|C|1102

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B8

50S RIBOSOMAL PROTEIN L36

Chain BL

50S RIBOSOMAL PROTEIN L11