IL_4V4Z_090

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

4V4Z|1|BA|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4Z_090 not in the Motif Atlas

Geometric match to IL_5J7L_286

Geometric discrepancy: 0.3552

The information below is about IL_5J7L_286

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

4V4Z|1|BA|C|1196
4V4Z|1|BA|G|1197
4V4Z|1|BA|U|1198
*
4V4Z|1|BA|A|1247
4V4Z|1|BA|G|1248
4V4Z|1|BA|U|1249
4V4Z|1|BA|G|1250

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BF

50S RIBOSOMAL PROTEIN L4

Chain BO

50S RIBOSOMAL PROTEIN L15

Chain BT

50S RIBOSOMAL PROTEIN L20