IL_4V4Z_120

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

CAG*CGGG

Length

7 nucleotides

Bulged bases

4V4Z|1|BA|G|2238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4Z_120 not in the Motif Atlas

Homologous match to IL_7RQB_082

Geometric discrepancy: 0.226

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4V4Z|1|BA|C|2081
4V4Z|1|BA|A|2082
4V4Z|1|BA|G|2083
*
4V4Z|1|BA|C|2236
4V4Z|1|BA|G|2237
4V4Z|1|BA|G|2238
4V4Z|1|BA|G|2239

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AD

Transfer RNA; tRNA

Chain B3

50S RIBOSOMAL PROTEIN L31

Chain BD

50S RIBOSOMAL PROTEIN L2