IL_4V4Z_123

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

4V4Z|1|BA|G|2116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4Z_123 not in the Motif Atlas

Geometric match to IL_1MZP_002

Geometric discrepancy: 0.2862

The information below is about IL_1MZP_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

4V4Z|1|BA|G|2110
4V4Z|1|BA|C|2111
4V4Z|1|BA|G|2112
4V4Z|1|BA|U|2113
4V4Z|1|BA|A|2114
4V4Z|1|BA|G|2115
4V4Z|1|BA|G|2116
4V4Z|1|BA|A|2117
4V4Z|1|BA|U|2118
4V4Z|1|BA|A|2119
4V4Z|1|BA|G|2120
*
4V4Z|1|BA|C|2178
4V4Z|1|BA|C|2179

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AD

Transfer RNA; tRNA

Chain BC

50S RIBOSOMAL PROTEIN L1