IL_4V4Z_124

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4Z_124 not in the Motif Atlas

Homologous match to IL_7RQB_086

Geometric discrepancy: 0.3241

The information below is about IL_7RQB_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4Z|1|BA|G|2124
4V4Z|1|BA|G|2125
4V4Z|1|BA|A|2126
4V4Z|1|BA|G|2127
*
4V4Z|1|BA|C|2161
4V4Z|1|BA|G|2162
4V4Z|1|BA|C|2163
4V4Z|1|BA|C|2164
4V4Z|1|BA|G|2165
4V4Z|1|BA|G|2166
4V4Z|1|BA|U|2167
4V4Z|1|BA|G|2168
4V4Z|1|BA|A|2169
4V4Z|1|BA|A|2170
4V4Z|1|BA|A|2171
4V4Z|1|BA|U|2172
4V4Z|1|BA|A|2173
4V4Z|1|BA|C|2174

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AD

Transfer RNA; tRNA

Chain BC

50S RIBOSOMAL PROTEIN L1