IL_4V4Z_146
3D structure
- PDB id
- 4V4Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 4.51 Å
Loop
- Sequence
- CC*GAAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4Z_146 not in the Motif Atlas
- Geometric match to IL_1U9S_005
- Geometric discrepancy: 0.3785
- The information below is about IL_1U9S_005
- Detailed Annotation
- Minor groove platform, major groove intercalation
- Broad Annotation
- Minor groove platform, major groove intercalation
- Motif group
- IL_95583.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
4V4Z|1|BB|C|30
4V4Z|1|BB|C|31
*
4V4Z|1|BB|G|51
4V4Z|1|BB|A|52
4V4Z|1|BB|A|53
4V4Z|1|BB|G|54
Current chains
- Chain BB
- 5S rRNA
Nearby chains
- Chain BG
- 50S RIBOSOMAL PROTEIN L5
- Chain BR
- 50S RIBOSOMAL PROTEIN L18
Coloring options: