IL_4V50_028

3D structure

PDB id

4V50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

4V50|1|AA|A|532, 4V50|1|AA|U|534, 4V50|1|AA|A|535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V50_028 not in the Motif Atlas

Homologous match to IL_4LFB_021

Geometric discrepancy: 0.3776

The information below is about IL_4LFB_021

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_52042.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V50|1|AA|G|515
4V50|1|AA|U|516
4V50|1|AA|G|517
4V50|1|AA|C|518
4V50|1|AA|C|519
4V50|1|AA|A|520
4V50|1|AA|G|521
*
4V50|1|AA|C|528
4V50|1|AA|G|529
4V50|1|AA|G|530
4V50|1|AA|U|531
4V50|1|AA|A|532
4V50|1|AA|A|533
4V50|1|AA|U|534
4V50|1|AA|A|535
4V50|1|AA|C|536

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AL

30S ribosomal protein S12