IL_4V50_089

3D structure

PDB id

4V50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4V50|1|BB|G|801, 4V50|1|BB|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V50_089 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.0723

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

4V50|1|BB|G|674
4V50|1|BB|A|675
4V50|1|BB|A|676
4V50|1|BB|A|677
4V50|1|BB|C|678
*
4V50|1|BB|G|799
4V50|1|BB|A|800
4V50|1|BB|G|801
4V50|1|BB|A|802
4V50|1|BB|U|803
4V50|1|BB|A|804
4V50|1|BB|G|805
4V50|1|BB|C|806

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BL

50S ribosomal protein L15