IL_4V50_189

3D structure

PDB id

4V50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

4V50|1|CA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V50_189 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1525

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

4V50|1|CA|G|147
4V50|1|CA|G|148
4V50|1|CA|A|149
4V50|1|CA|U|150
4V50|1|CA|A|151
4V50|1|CA|A|152
4V50|1|CA|C|153
*
4V50|1|CA|G|168
4V50|1|CA|C|169
4V50|1|CA|U|170
4V50|1|CA|A|171
4V50|1|CA|A|172
4V50|1|CA|U|173
4V50|1|CA|A|174
4V50|1|CA|C|175

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CT

30S ribosomal protein S20