IL_4V50_191

3D structure

PDB id

4V50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

4V50|1|CA|U|244, 4V50|1|CA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V50_191 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.1006

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

4V50|1|CA|G|242
4V50|1|CA|A|243
4V50|1|CA|U|244
4V50|1|CA|U|245
4V50|1|CA|A|246
4V50|1|CA|G|247
*
4V50|1|CA|C|277
4V50|1|CA|G|278
4V50|1|CA|A|279
4V50|1|CA|C|280
4V50|1|CA|G|281
4V50|1|CA|A|282
4V50|1|CA|U|283
4V50|1|CA|C|284

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CL

30S ribosomal protein S12

Chain CQ

30S ribosomal protein S17