IL_4V50_218

3D structure

PDB id

4V50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V50_218 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.0622

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

4V50|1|CA|G|887
4V50|1|CA|G|888
4V50|1|CA|A|889
4V50|1|CA|G|890
4V50|1|CA|U|891
4V50|1|CA|A|892
4V50|1|CA|C|893
4V50|1|CA|G|894
*
4V50|1|CA|U|905
4V50|1|CA|A|906
4V50|1|CA|A|907
4V50|1|CA|A|908
4V50|1|CA|A|909
4V50|1|CA|C|910

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CL

30S ribosomal protein S12