IL_4V51_051

3D structure

PDB id

4V51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V51_051 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.0923

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

4V51|1|AA|C|1303
4V51|1|AA|G|1304
4V51|1|AA|G|1305
4V51|1|AA|A|1306
4V51|1|AA|U|1307
4V51|1|AA|U|1308
*
4V51|1|AA|A|1329
4V51|1|AA|U|1330
4V51|1|AA|G|1331
4V51|1|AA|A|1332
4V51|1|AA|A|1333
4V51|1|AA|G|1334

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AM

30S RIBOSOMAL PROTEIN S13

Chain AU

30S RIBOSOMAL PROTEIN THX