IL_4V51_070

3D structure

PDB id

4V51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAAUC*GAUAG

Length

11 nucleotides

Bulged bases

4V51|1|BA|A|283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V51_070 not in the Motif Atlas

Geometric match to IL_2QWY_007

Geometric discrepancy: 0.3842

The information below is about IL_2QWY_007

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V51|1|BA|C|280
4V51|1|BA|G|281
4V51|1|BA|A|282
4V51|1|BA|A|283
4V51|1|BA|U|284
4V51|1|BA|C|285
*
4V51|1|BA|G|356
4V51|1|BA|A|357
4V51|1|BA|U|358
4V51|1|BA|A|359
4V51|1|BA|G|360

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains