IL_4V51_129

3D structure

PDB id

4V51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

4V51|1|BA|A|1938, 4V51|1|BA|U|1944, 4V51|1|BA|U|1963

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V51_129 not in the Motif Atlas

Geometric match to IL_4WF9_077

Geometric discrepancy: 0.123

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

4V51|1|BA|C|1934
4V51|1|BA|G|1935
4V51|1|BA|A|1936
4V51|1|BA|A|1937
4V51|1|BA|A|1938
4V51|1|BA|U|1939
4V51|1|BA|U|1940
4V51|1|BA|C|1941
4V51|1|BA|C|1942
4V51|1|BA|U|1943
4V51|1|BA|U|1944
4V51|1|BA|G|1945
*
4V51|1|BA|C|1961
4V51|1|BA|C|1962
4V51|1|BA|U|1963
4V51|1|BA|G|1964

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BD

50S RIBOSOMAL PROTEIN L2