IL_4V51_235

3D structure

PDB id

4V51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CCCCAG*UGGGGGG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V51_235 not in the Motif Atlas

Geometric match to IL_6DVK_004

Geometric discrepancy: 0.3341

The information below is about IL_6DVK_004

Detailed Annotation

tSH-tHW-tHS-cWW

Broad Annotation

No text annotation

Motif group

IL_35186.2

Basepair signature

cWW-tSH-tHW-L-R-cWW-cWW

Number of instances in this motif group

6

Unit IDs

4V51|1|DA|C|285
4V51|1|DA|C|286
4V51|1|DA|C|287
4V51|1|DA|C|288
4V51|1|DA|A|289
4V51|1|DA|G|290
*
4V51|1|DA|U|350
4V51|1|DA|G|351
4V51|1|DA|G|352
4V51|1|DA|G|353
4V51|1|DA|G|354
4V51|1|DA|G|355
4V51|1|DA|G|356

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains