IL_4V51_237

3D structure

PDB id

4V51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

4V51|1|DA|U|504, 4V51|1|DA|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V51_237 not in the Motif Atlas

Geometric match to IL_7RQB_014

Geometric discrepancy: 0.1024

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

4V51|1|DA|G|481
4V51|1|DA|A|482
4V51|1|DA|A|483
4V51|1|DA|C|484
*
4V51|1|DA|G|496
4V51|1|DA|A|497
4V51|1|DA|G|498
4V51|1|DA|U|499
4V51|1|DA|G|500
4V51|1|DA|A|501
4V51|1|DA|A|502
4V51|1|DA|A|503
4V51|1|DA|U|504
4V51|1|DA|A|505
4V51|1|DA|G|506
4V51|1|DA|A|507
4V51|1|DA|G|508
4V51|1|DA|C|509

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain DW

50S RIBOSOMAL PROTEIN L22

Chain DY

50S RIBOSOMAL PROTEIN L24