IL_4V51_316

3D structure

PDB id

4V51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

4V51|1|DA|G|2655

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V51_316 not in the Motif Atlas

Homologous match to IL_5J7L_346

Geometric discrepancy: 0.3505

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V51|1|DA|C|2652
4V51|1|DA|U|2653
4V51|1|DA|A|2654
4V51|1|DA|G|2655
4V51|1|DA|U|2656
4V51|1|DA|A|2657
4V51|1|DA|C|2658
*
4V51|1|DA|G|2663
4V51|1|DA|G|2664
4V51|1|DA|A|2665
4V51|1|DA|C|2666
4V51|1|DA|C|2667
4V51|1|DA|G|2668

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain DH

50S RIBOSOMAL PROTEIN L6