IL_4V52_138

3D structure

PDB id

4V52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

4V52|1|BB|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V52_138 not in the Motif Atlas

Geometric match to IL_1DQF_001

Geometric discrepancy: 0.3582

The information below is about IL_1DQF_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

4V52|1|BB|C|1727
4V52|1|BB|C|1728
*
4V52|1|BB|G|1731
4V52|1|BB|C|1732
4V52|1|BB|G|1733

Current chains

Chain BB

23S rRNA

Nearby chains