IL_4V52_190

3D structure

PDB id

4V52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

4V52|1|CA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V52_190 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1354

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

4V52|1|CA|G|147
4V52|1|CA|G|148
4V52|1|CA|A|149
4V52|1|CA|U|150
4V52|1|CA|A|151
4V52|1|CA|A|152
4V52|1|CA|C|153
*
4V52|1|CA|G|168
4V52|1|CA|C|169
4V52|1|CA|U|170
4V52|1|CA|A|171
4V52|1|CA|A|172
4V52|1|CA|U|173
4V52|1|CA|A|174
4V52|1|CA|C|175

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CT

30S ribosomal protein S20